PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023125.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 291aa    MW: 30150.7 Da    PI: 5.4138
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023125.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.2e-10207248955
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++RR+ri +++ +L+el+P+      +K++ +++LekA+ Y+k Lq
  Do023125.1 207 AKNRRERISERLRTLQELVPNG-----TKVDMVTMLEKAITYVKFLQ 248
                 69******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.218198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.81E-13200252No hitNo description
Gene3DG3DSA:4.10.280.102.5E-12200255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-13202258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-12204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-7207248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MALVREHSGY GGFDGADAFD ALGYGHDALL GFDAASLLGG GGSYAGAVAD GGNVWPGARA  60
SSVLAFDCAT AVTTVSGDEE ECDAWIDATD QSYGDAAAAP EERHALTASV GFDAATGCFT  120
LTERASSSGG AGRTFGLLFP STAAAAASPE RAAAPVRASQ KRTYVGVEPP LAAVSPNKKH  180
CGTGRKATTK VKSAPAIPTK DPQSLAAKNR RERISERLRT LQELVPNGTK VDMVTMLEKA  240
ITYVKFLQLQ VKVLATDEFW PAQGGKAPEI SQVREALDAI LSSASQRGEL N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096628e-99AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660552.11e-148PREDICTED: uncharacterized protein LOC101767899
SwissprotQ9C7073e-53BH083_ARATH; Transcription factor bHLH83
TrEMBLK3YZ671e-150K3YZ67_SETIT; Uncharacterized protein
STRINGSi019575m1e-150(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.19e-52ROOT HAIR DEFECTIVE6